en:news:challenges:biocreative-v:track-2-chemdner
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en:news:challenges:biocreative-v:track-2-chemdner [2017/04/20 12:22] pzczxs [References] |
en:news:challenges:biocreative-v:track-2-chemdner [2017/04/20 12:27] (当前版本) pzczxs [Timeline] |
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| ====Timeline==== | ====Timeline==== | ||
| *January 2015: Task announcement & call for participation | *January 2015: Task announcement & call for participation | ||
| - | *March 2nd: Sample set patent abstract plain text release: {{:news:challenge:biocreative-v:chemdner_sample_text.zip|CHEMDNER-patents sample text}} | + | *March 2nd: Sample set patent abstract plain text release: {{resources:datasets:chemdner_sample_text.zip|CHEMDNER-patents sample text}} |
| - | *March 27th: Sample set annotation release: {{:news:challenge:biocreative-v:chemdner_cpd_sample.zip|CPD subtask}}, {{:news:challenge:biocreative-v:chemdner_cemp_sample_v02.zip|CEMP subtask}} (corrected, version 2), {{:news:challenge:biocreative-v:chemdner_cer_sample.zip|CER subtask}} | + | *March 27th: Sample set annotation release: {{resources:datasets:chemdner_cpd_sample.zip|CPD subtask}}, {{resources:datasets:chemdner_cemp_sample_v02.zip|CEMP subtask}} (corrected, version 2), {{resources:datasets:chemdner_cer_sample.zip|CER subtask}} |
| *End April 2015: Release of training data with annotation guidelines | *End April 2015: Release of training data with annotation guidelines | ||
| *End May 2015: Release of development data | *End May 2015: Release of development data | ||
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| ===Corpus==== | ===Corpus==== | ||
| - | -Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M Lowe, Roger A Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sergio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V Ramanan, Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A Akhondi, Jan A Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Komandur Elayavilli Ravikumar, Andre Lamurias, Francisco M Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Joaquim Cruz, Isabel Segura-Bedmar, Paloma Martinez, Julen Oyarzabal, and Alfonso Valencia, 2015. [[http://www.jcheminf.com/content/7/S1/S2/abstract|The CHEMDNER Corpus of Chemicals and Drugs and its Annotation Principles]]. //Journal of Cheminformatics//, Vol. 7, No. Suppl 1, pp. S2. ''{{zh:people:xush:papers:krl_15.pdf|PDF}}'' | + | -Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M Lowe, Roger A Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sergio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V Ramanan, Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A Akhondi, Jan A Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Komandur Elayavilli Ravikumar, Andre Lamurias, Francisco M Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Joaquim Cruz, Isabel Segura-Bedmar, Paloma Martinez, Julen Oyarzabal, and Alfonso Valencia, 2015. [[http://www.jcheminf.com/content/7/S1/S2/abstract|The CHEMDNER Corpus of Chemicals and Drugs and its Annotation Principles]]. //Journal of Cheminformatics//, Vol. 7, No. Suppl 1, pp. S2. ''{{xushuo:papers:krl_15.pdf|PDF}}'' |
| - | -Saber A. Akhondi, Alexander G. Klenner, Christian Tyrchan, Anil K. Manchala, Kiran Boppana, Daniel Lowe, Marc Zimmermann, Sarma A. R. P. Jagarlapudi, Roger Sayle, Jan A. Kors, and Sorel Muresan, 2014. [[http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0107477|Annotated Chemical Patent Corpus: A Gold Standard for Text Mining]]. //PloS one//, Vol. 9, No. 9, pp. e107477. ''{{resources:papers:aktm_14.pdf|PDF}}'' ''{{group:datasets:patent_corpus.zip|data}}'' | + | -Saber A. Akhondi, Alexander G. Klenner, Christian Tyrchan, Anil K. Manchala, Kiran Boppana, Daniel Lowe, Marc Zimmermann, Sarma A. R. P. Jagarlapudi, Roger Sayle, Jan A. Kors, and Sorel Muresan, 2014. [[http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0107477|Annotated Chemical Patent Corpus: A Gold Standard for Text Mining]]. //PloS one//, Vol. 9, No. 9, pp. e107477. ''{{resources:papers:aktm_14.pdf|PDF}}'' ''{{resources:datasets:patent_corpus.zip|data}}'' |
| -Márton Kiss, Ágoston Nagy, Veronika Vincze, Attila Almási, Zoltán Alexin, and János Csirik, 2012. A Manually Annotated Corpus of Pharmaceutical Patents. //Text, Speech and Dialogue//. Springer Berlin Heidelberg. pp. 135–142. ''{{resources:papers:knva_12.pdf|PDF}}'' | -Márton Kiss, Ágoston Nagy, Veronika Vincze, Attila Almási, Zoltán Alexin, and János Csirik, 2012. A Manually Annotated Corpus of Pharmaceutical Patents. //Text, Speech and Dialogue//. Springer Berlin Heidelberg. pp. 135–142. ''{{resources:papers:knva_12.pdf|PDF}}'' | ||
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| ====Downloads==== | ====Downloads==== | ||
| - | *{{:news:challenge:biocreative-v:chemdner_cemp_sample_v02.zip|chemdner cemp subtask sample version 2}} | + | *{{resources:datasets:chemdner_cemp_sample_v02.zip|chemdner cemp subtask sample version 2}} |
| - | *{{:news:challenge:biocreative-v:chemdner_cer_sample.zip|chemdner cer subtask sample}} | + | *{{resources:datasets:chemdner_cer_sample.zip|chemdner cer subtask sample}} |
| - | *{{:news:challenge:biocreative-v:chemdner_cpd_sample.zip|chemdner cpd subtask sample}} | + | *{{resources:datasets:chemdner_cpd_sample.zip|chemdner cpd subtask sample}} |
| - | *{{:news:challenge:biocreative-v:chemdner_sample_text.zip|Sample patent abstract text}} | + | *{{resources:datasets:chemdner_sample_text.zip|Sample patent abstract text}} |
en/news/challenges/biocreative-v/track-2-chemdner.1492662129.txt.gz · 最后更改: 2017/04/20 12:22 由 pzczxs