zh:notes:atot_credit
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zh:notes:atot_credit [2020/09/10 08:12] pzczxs [Update Sequence No. and Corresponding Author] |
zh:notes:atot_credit [2022/06/30 11:28] (当前版本) pzczxs 讨论状态变化了 |
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| - | ====== AToT Model armed with Authorship Credit ====== | + | ====== AT Model armed with Authorship Credit ====== |
| ===== Requirements ===== | ===== Requirements ===== | ||
| * [[http://scikit.ml/index.html|Scikit-Multilearn]] | * [[http://scikit.ml/index.html|Scikit-Multilearn]] | ||
| 行 22: | 行 22: | ||
| Once correction is done, to run <color red>TargetArticleDoiUpdater.java</color> to import the related information in the file <color red>data/target_article_dois.xlsx</color> into MySQL database. | Once correction is done, to run <color red>TargetArticleDoiUpdater.java</color> to import the related information in the file <color red>data/target_article_dois.xlsx</color> into MySQL database. | ||
| - | There are still three duplications with id = "WOS:000246296800029" and "WOS:000247372300026", id = "WOS:000297670800005" and "WOS:000293697700003", and id = "WOS:000393719000030" and id = "WOS:000394061000172". To run the following sql, the duplications will be removed. | + | There are still three duplications with id = "WOS:000246296800029" and "WOS:000247372300026", id = "WOS:000297670800005" and "WOS:000293697700003", and id = "WOS:000393719000030" and id = "WOS:000394061000172". To run the following SQL statements, the duplications will be removed. |
| <code sql> | <code sql> | ||
| DELETE FROM target_article_author WHERE target_article_id = "WOS:000247372300026"; | DELETE FROM target_article_author WHERE target_article_id = "WOS:000247372300026"; | ||
| 行 37: | 行 37: | ||
| </code> | </code> | ||
| - | However, several target articles are attached wrong DOI names or have still no DOI names. To run the following sql, the resulting DOI names will be corrected or added. | + | However, several target articles are attached wrong DOI names or have still no DOI names. To run the following SQL statements, the resulting DOI names will be corrected or added. |
| <code sql> | <code sql> | ||
| UPDATE target_article SET doi = "10.2307/24102078" WHERE id = "WOS:000252249700032"; | UPDATE target_article SET doi = "10.2307/24102078" WHERE id = "WOS:000252249700032"; | ||
| 行 50: | 行 50: | ||
| UPDATE target_article SET doi = "10.1097/00006231-200306000-00013" WHERE id = "WOS:000183373800013"; | UPDATE target_article SET doi = "10.1097/00006231-200306000-00013" WHERE id = "WOS:000183373800013"; | ||
| UPDATE target_article SET doi = "10.1097/00005176-200406001-00720" WHERE id = "WOS:000227354700101"; | UPDATE target_article SET doi = "10.1097/00005176-200406001-00720" WHERE id = "WOS:000227354700101"; | ||
| + | UPDATE target_article SET doi = "10.14670/HH-26.471" WHERE id = "WOS:000287804300007"; | ||
| </code> | </code> | ||
| 行 64: | 行 65: | ||
| Once correction is done, to run <color red>TargetArticleSeqNoAndIsReprintUpdater.java</color> in the package <color red>cn.edu.bjut.ui</color>. | Once correction is done, to run <color red>TargetArticleSeqNoAndIsReprintUpdater.java</color> in the package <color red>cn.edu.bjut.ui</color>. | ||
| - | For unknown reasons, three coauthors are missed from the publication with id = ""WOS:000365103600006""; | + | For unknown reasons, three coauthors are missed from the publication with id = ""WOS:000365103600006"". To conduct the following sql statements to supplement them. |
| + | <code sql> | ||
| + | INSERT author (id, full_name, last_name, first_name) VALUES (10846, "Linard, Alban", "Linard", "Alban"); | ||
| + | INSERT author (id, full_name, last_name, first_name) VALUES (10849, "Bóbeda, Edmundo López", "Bóbeda", "Edmundo López"); | ||
| + | INSERT author (id, full_name, last_name, first_name) VALUES (10851, "Marechal, Alexis", "Marechal", "Alexis"); | ||
| + | |||
| + | INSERT target_article_author (target_article_id, author_id, seq_no_original, seq_no, is_reprint_original, is_reprint) VALUES ("WOS:000365103600006", 10846, 4, 4, 0, 0); | ||
| + | INSERT target_article_author (target_article_id, author_id, seq_no_original, seq_no, is_reprint_original, is_reprint) VALUES ("WOS:000365103600006", 10849, 5, 5, 0, 0); | ||
| + | INSERT target_article_author (target_article_id, author_id, seq_no_original, seq_no, is_reprint_original, is_reprint) VALUES ("WOS:000365103600006", 10851, 6, 6, 0, 0); | ||
| + | </code> | ||
| ===== Fetch and Import Citing Articles ===== | ===== Fetch and Import Citing Articles ===== | ||
| To run <color red>DownloadByWosId.java</color>, a file <color red>citing_article.wos_id</color> in the directory <color red>data</color> will be generated. According to this file, to fetch full-record and cited references in the format of bibtex from Web of Science, and to save them in the directory <color red>data/wos/citing</color>. | To run <color red>DownloadByWosId.java</color>, a file <color red>citing_article.wos_id</color> in the directory <color red>data</color> will be generated. According to this file, to fetch full-record and cited references in the format of bibtex from Web of Science, and to save them in the directory <color red>data/wos/citing</color>. | ||
| 行 160: | 行 170: | ||
| <code bash> | <code bash> | ||
| - | > python split_data.py multi-label/syn_bio.corpus 0.45 multi-label/syn_bio.splits | + | > python split_data.py data/multi-label/syn_bio.corpus 0.45 data/multi-label/syn_bio.splits |
| </code> | </code> | ||
| To run <color red>TrainTestSetSplitter.java</color> in the package <color red>cn.edu.bjut.multilabel</color>. In this time, two files <color red>syn_bio.train.docs</color> and <color red>syn_bio.test.docs</color> in the directory <color red>data/multi-label</color> will be generated. | To run <color red>TrainTestSetSplitter.java</color> in the package <color red>cn.edu.bjut.multilabel</color>. In this time, two files <color red>syn_bio.train.docs</color> and <color red>syn_bio.test.docs</color> in the directory <color red>data/multi-label</color> will be generated. | ||
| + | ===== Parameter Tuning ===== | ||
| + | To run <color red>ATArithmeticCreditTuningParam.java</color>, <color red>ATAxiomaticCreditTuningParam.java</color>, <color red>ATGeometricCreditTuningParam.java</color>, <color red>ATGoldenNumberCreditTuningParam.java</color>, <color red>ATHarmonicCreditTuningParam.java</color>, and <color red>ATNetworkCreditTuningParam.java</color> in the package <color red>cn.edu.bjut.ui</color>. Note that if one wants to turn on the hyper-authorship strategy, the second parameter is set to <color red>true</color> in these java files, otherwise false. | ||
| + | |||
| + | <code matlab> | ||
| + | > load train_perplexity; | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(arithmetic_disabled, arithmetic_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(arithmetic_enabled, arithmetic_legends); | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(geometric_disabled, geometric_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(geometric_enabled, geometric_legends); | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(harmonic_disabled, harmonic_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(harmonic_enabled, harmonic_legends); | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(network_disabled, network_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(network_enabled, network_legends); | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(axiomatic_disabled, axiomatic_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(axiomatic_enabled, axiomatic_legends); | ||
| + | |||
| + | > figure | ||
| + | > plotPerplexity(golden_number_disabled, golden_number_legends); | ||
| + | > figure | ||
| + | > plotPerplexity(golden_number_enabled, golden_number_legends); | ||
| + | </code> | ||
| + | |||
| + | |||
| + | ===== Author Interest Discovery ===== | ||
| + | To run <color red>ATArithmeticCreditRunner.java</color>, <color red>ATAxiomaticCreditRunner.java</color>, <color red>ATGeometricCreditRunner.java</color>, <color red>ATGoldenNumberCreditRunner.java</color>, <color red>ATHarmonicCreditRunner.java</color>, and <color red>ATNetworkCreditRunner.java</color> in the package <color red>cn.edu.bjut.ui</color>. | ||
| - | ~~DISCUSSION~~ | + | ~~DISCUSSION:closed~~ |
zh/notes/atot_credit.1599696720.txt.gz · 最后更改: 2020/09/10 08:12 由 pzczxs