zh:notes:disruptive_index
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zh:notes:disruptive_index [2025/01/21 10:16] pzczxs [Import Metadata] |
zh:notes:disruptive_index [2025/03/11 09:00] (当前版本) pzczxs [Download Data] |
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| 行 68: | 行 68: | ||
| <code bash> | <code bash> | ||
| > nohup ./import-metadata-opencitations.sh 1 OpenCitations/1/citing_articles > opencitations-citing-1.log 2>&1 | > nohup ./import-metadata-opencitations.sh 1 OpenCitations/1/citing_articles > opencitations-citing-1.log 2>&1 | ||
| + | > nohup ./import-metadata-opencitations.sh 2 OpenCitations/2/citing_articles > opencitations-citing-2.log 2>&1 | ||
| + | > nohup ./import-metadata-opencitations.sh 3 OpenCitations/3/citing_articles > opencitations-citing-3.log 2>&1 | ||
| + | > nohup ./import-metadata-opencitations.sh 4 OpenCitations/4/citing_articles > opencitations-citing-4.log 2>&1 | ||
| </code> | </code> | ||
| ===== Dimensions ===== | ===== Dimensions ===== | ||
| ==== Download Data ==== | ==== Download Data ==== | ||
| - | TODO | + | For each domain (e.g., SYNTHETIC BIOLOGY), the procedure begins by querying the Dimensions API with DOIs from a specified list (e.g., doi_list1.csv) to retrieve target articles’ metadata (ID, title, authors, year, journal) and their referenced publications (referenced_pubs), saving results as JSON files in the target_articles folder by running <color red>dimensions_retrieve.ipynb</color>. Next, reference IDs extracted from the referenced_pubs field are used to fetch metadata for cited articles, stored in the cited_articles folder by running <color red>dimensions_references.ipynb</color>. Finally, a combined list of IDs from target and cited articles is queried to identify citing articles (those whose reference_ids include any of the input IDs), with outputs saved to the citing_articles folder by running <color red>dimensions_citations.ipynb</color>. |
| ==== Import Target Articles with Backward Citations ==== | ==== Import Target Articles with Backward Citations ==== | ||
| Import the target articles with the resulting backward citations to the database by running <color red>TargetArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | Import the target articles with the resulting backward citations to the database by running <color red>TargetArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | ||
| + | |||
| + | <code bash> | ||
| + | > nohup ./import-dimensions.sh 1 Dimensions/1/target_articles 1 > dimensions-target-1.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 2 Dimensions/2/target_articles 1 > dimensions-target-2.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 3 Dimensions/3/target_articles 1 > dimensions-target-3.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 4 Dimensions/4/target_articles 1 > dimensions-target-4.log 2>&1 | ||
| + | </code> | ||
| ==== Import Cited Articles ==== | ==== Import Cited Articles ==== | ||
| Import the cited articles to the database by running <color red>CitedArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | Import the cited articles to the database by running <color red>CitedArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | ||
| + | |||
| + | <code bash> | ||
| + | > nohup ./import-dimensions.sh 1 Dimensions/1/cited_articles 2 > dimensions-cited-1.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 2 Dimensions/2/cited_articles 2 > dimensions-cited-2.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 3 Dimensions/3/cited_articles 2 > dimensions-cited-3.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 4 Dimensions/4/cited_articles 2 > dimensions-cited-4.log 2>&1 | ||
| + | </code> | ||
| ==== Import Citing Articles with Backward Citations ==== | ==== Import Citing Articles with Backward Citations ==== | ||
| Import the citing articles with the resulting backward citations to the database by running <color red>CitingArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | Import the citing articles with the resulting backward citations to the database by running <color red>CitingArticleImporter.java</color> in the package <color red>cn.edu.bjut.dimensions</color>. | ||
| + | |||
| + | <code bash> | ||
| + | > nohup ./import-dimensions.sh 1 Dimensions/1/citing_articles 3 > dimensions-citing-1.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 2 Dimensions/2/citing_articles 3 > dimensions-citing-2.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 3 Dimensions/3/citing_articles 3 > dimensions-citing-3.log 2>&1 | ||
| + | > nohup ./import-dimensions.sh 4 Dimensions/4/citing_articles 3 > dimensions-citing-4.log 2>&1 | ||
| + | </code> | ||
| <!-- | <!-- | ||
| 行 126: | 行 150: | ||
| The citing articles with the resulting backward citations can be imported to the database by running <color red>CitingArticleImporter.java</color> in the package <color red>cn.edu.bjut.wos</color>. | The citing articles with the resulting backward citations can be imported to the database by running <color red>CitingArticleImporter.java</color> in the package <color red>cn.edu.bjut.wos</color>. | ||
| <code bash> | <code bash> | ||
| - | > nohup ./import-wos.sh 1 WoS/1/citing_articles > 1.log 2>&1 | + | > nohup ./import-wos.sh 1 WoS/1/citing_articles > wos-citing-1.log 2>&1 |
| - | > nohup ./import-wos.sh 2 WoS/2/citing_articles > 2.log 2>&1 | + | > nohup ./import-wos.sh 2 WoS/2/citing_articles > wos-citing-2.log 2>&1 |
| - | > nohup ./import-wos.sh 3 WoS/3/citing_articles > 3.log 2>&1 | + | > nohup ./import-wos.sh 3 WoS/3/citing_articles > wos-citing-3.log 2>&1 |
| - | > nohup ./import-wos.sh 4 WoS/4/citing_articles > 4.log 2>&1 | + | > nohup ./import-wos.sh 4 WoS/4/citing_articles > wos-citing-4.log 2>&1 |
| </code> | </code> | ||
| 行 144: | 行 168: | ||
| > UPDATE article SET doi = "10.3389/FPLS.2016.00706" WHERE doi = "10.3389/F,OLS.2016.00706"; | > UPDATE article SET doi = "10.3389/FPLS.2016.00706" WHERE doi = "10.3389/F,OLS.2016.00706"; | ||
| > UPDATE article SET doi = "10.1016/J.GEB.2019.07.003" WHERE doi = "10.1016/J,GEB.2019.07.003"; | > UPDATE article SET doi = "10.1016/J.GEB.2019.07.003" WHERE doi = "10.1016/J,GEB.2019.07.003"; | ||
| + | > UPDATE article SET doi = "10.1017/S0140525X21001370" WHERE doi = "10.1017/S0140525X21001370,E120"; | ||
| + | > UPDATE article SET doi = "10.1007/978-3-030-68386-3_18" WHERE doi = "10.1007/978-3-030-68,38,6-3_18"; | ||
| + | > UPDATE article SET doi = "10.1016/J.MULFIN.2018.06.001" WHERE doi = "10.1016/J.MULFIN,2018.06.001"; | ||
| + | > UPDATE article SET doi = "10.1007/978-3-030-68386-3_8" WHERE doi = "10.1007/978-3-030-68,38,6-3_8"; | ||
| + | > UPDATE article SET doi = "10.1002/CPT.1619" WHERE doi = "10.1002/CPT.1619MASSACHUSETTS,USA.*"; | ||
| </code> | </code> | ||
| + | <!-- | ||
| <code bash> | <code bash> | ||
| > ./merge-article-doi-wos.sh > merge-article-doi.log | > ./merge-article-doi-wos.sh > merge-article-doi.log | ||
| </code> | </code> | ||
| + | --> | ||
| Several cited articles are attached with multiple DOI numbers. The cited articles with multiple DOI names can be resolved by running <color red>CitedArticleMultipleDoiResolver.java</color> in the package <color red>cn.edu.bjut.wos</color>. Note that this operation needs to access the [[https://www.doi.org/the-identifier/resources/factsheets/doi-resolution-documentation|DOI parser]]. | Several cited articles are attached with multiple DOI numbers. The cited articles with multiple DOI names can be resolved by running <color red>CitedArticleMultipleDoiResolver.java</color> in the package <color red>cn.edu.bjut.wos</color>. Note that this operation needs to access the [[https://www.doi.org/the-identifier/resources/factsheets/doi-resolution-documentation|DOI parser]]. | ||
| 行 222: | 行 253: | ||
| <code bash> | <code bash> | ||
| > nohup ./update-doi-publication-year.sh > update-doi-publication-year.log 2>&1 | > nohup ./update-doi-publication-year.sh > update-doi-publication-year.log 2>&1 | ||
| - | > nohup ./check-doi-publication-year.sh > check-doi-publication-year-2.log 2>&1 | + | > nohup ./check-doi-publication-year.sh > check-doi-publication-year.log 2>&1 |
| </code> | </code> | ||
| 行 243: | 行 274: | ||
| ==== Calculate Disruptive Index ==== | ==== Calculate Disruptive Index ==== | ||
| + | Before calculation, the related data can be exported by running <color red>CitationExporter.java</color> in the package <color red>cn.edu.bjut.ui</color>. | ||
| + | <code bash> | ||
| + | > ./export-citations.sh | ||
| + | </code> | ||
| ~~DISCUSSION:closed~~ | ~~DISCUSSION:closed~~ | ||
zh/notes/disruptive_index.1737425782.txt.gz · 最后更改: 2025/01/21 10:16 由 pzczxs