zh:notes:techemergence
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zh:notes:techemergence [2020/10/17 11:50] pzczxs 创建 |
zh:notes:techemergence [2020/10/17 16:19] (当前版本) pzczxs [Rum the DIM Model] |
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| To download [[ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz|PMC-ids-csv.gz]], and save it in the directory <color red>resource</color>. | To download [[ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz|PMC-ids-csv.gz]], and save it in the directory <color red>resource</color>. | ||
| - | To run <color red>PubMedIdUpdator.java</color> in the project <color red>EmergingTopicsConvert</color>. | + | To run <color red>PubMedIdUpdator.java</color> in the project <color red>EmergingTopicsConverter</color>. |
| ===== Extend with Medline/PubMed Full Text ===== | ===== Extend with Medline/PubMed Full Text ===== | ||
| 行 44: | 行 44: | ||
| To run <color red>DownloadByDoi.java</color> in the project <color red>EmergingTopicsConverter</color>, a file <color red>ref-ids2.txt</color> will be generated. According to this file, to fetch full-record and cited references in the format of CSV from All Database in the Web of Science, and to save <color red>data/contest/cited/csv</color>. | To run <color red>DownloadByDoi.java</color> in the project <color red>EmergingTopicsConverter</color>, a file <color red>ref-ids2.txt</color> will be generated. According to this file, to fetch full-record and cited references in the format of CSV from All Database in the Web of Science, and to save <color red>data/contest/cited/csv</color>. | ||
| - | To import the related information into the database with <color red>CSVReferencemporter.java</color> in the project <color red>EmergingTopicsConvert</color> from the directory <color red>data/contest/cited/csv</color>. | + | To import the related information into the database with <color red>CSVReferencemporter.java</color> in the project <color red>EmergingTopicsConverter</color> from the directory <color red>data/contest/cited/csv</color>. |
| ===== Assign wos_id for references ===== | ===== Assign wos_id for references ===== | ||
| 行 52: | 行 52: | ||
| ===== Merge Authors ===== | ===== Merge Authors ===== | ||
| To run <color red>AuthorMerger.java</color> in the project <color red>TechEmergence</color>. | To run <color red>AuthorMerger.java</color> in the project <color red>TechEmergence</color>. | ||
| + | |||
| + | ===== Detect and Tokenize Sentences, and Recognize Entities ===== | ||
| + | To run <color red>Converter2Genia.java</color> in the package <color red>cn.edu.bjut.genia</color> of the project <color red>EmergingTopicsConverter</color>. Thus, the articles will be saved in the directories <color red>data/contest-Genia/DIM</color> and <color red>data/contest-Genia/CIM</color>. Each article is named by its resulting id. | ||
| + | |||
| + | <code bash> | ||
| + | > ./run_geniass.sh geniass data/contest-Genia/DIM & | ||
| + | > ./run_geniatagger.sh geniatagger data/contest-Genia/DIM & | ||
| + | > ./run_geniass.sh geniass data/contest-Genia/CIM & | ||
| + | > ./run_geniatagger.sh geniatagger data/contest-Genia/CIM & | ||
| + | </code> | ||
| + | |||
| + | For each document, two files will be generated with the extension name <color red>.txt.ss</color> and <color red>.txt.ss.tag</color>. To save all <color red>.txt.ss</color> and <color red>.txt.ss.tag</color> files in the directories <color red>data/contest-Genia/DIM</color> and <color red>data/contest-Genia/CIM</color>. | ||
| + | |||
| + | ===== Rum the CIM Model ===== | ||
| + | To run <color red>Converter2DIM.java</color> in the package <color red>cn.edu.bjut.genia</color> of the project <color red>EmergingTopicsConverter</color>. Several files will be generated for the DIM model in the directory <color red>data/contest-DIM/emergence</color>. | ||
| + | |||
| + | ===== Rum the DIM Model ===== | ||
zh/notes/techemergence.1602906658.txt.gz · 最后更改: 2020/10/17 11:50 由 pzczxs